PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G32780.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 403aa    MW: 43520.1 Da    PI: 9.6256
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G32780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.31.8e-15183280295
                      EEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      +k+l  sdv+++gr+vlpkk ae++     +  k ++k l + d+++ + W++k++y  ++ks++yvl+ ++ ++v+ ++L+ gD++v++ d+ 
  ONIVA01G32780.1 183 QKELRYSDVSQLGRIVLPKKEAEAYlpiltS--KDGKKSLCMHDLQNaQLWTFKYRYwpNNKSRMYVLE-NTGDYVRTHDLQLGDSIVIYKDD- 272
                      688899**********************752..446678*****665599*******89999999**99.********************444. PP

                      SEE..EEE CS
               B3  88 sefelvvk 95 
                      ++ ++v++
  ONIVA01G32780.1 273 ENNRFVIG 280
                      55555665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-23181289IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.45E-17181279IPR015300DNA-binding pseudobarrel domain
CDDcd100176.23E-22181279No hitNo description
SMARTSM010191.1E-13182285IPR003340B3 DNA binding domain
PROSITE profilePS508639.234182285IPR003340B3 DNA binding domain
PfamPF023623.0E-12183280IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010116Biological Processpositive regulation of abscisic acid biosynthetic process
GO:0010262Biological Processsomatic embryogenesis
GO:0010373Biological Processnegative regulation of gibberellin biosynthetic process
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MRGEERWQEQ PALASHPSRA TLRPRGWPRL GLAPTGVGSS CPPAPASELA RHLARRAPVS  60
ASPPVLPPIK DQGARPPTLA ASAAAASSPP PPPPPPPIPP LPPSTSTSAA RPTDMAGVTS  120
KRRSSSASTS SSSGDGAAVS DRPRGVTRKR RSGGRCPRPA ASLRPAAPRP SSHHTAGLRV  180
ILQKELRYSD VSQLGRIVLP KKEAEAYLPI LTSKDGKKSL CMHDLQNAQL WTFKYRYWPN  240
NKSRMYVLEN TGDYVRTHDL QLGDSIVIYK DDENNRFVIG AKKAGDQQAA TVPQVDEHIS  300
TLFPIFPIAQ VDDYLSPMAP QVDISAFVPH ADENHEIFDG ILNSLPEIPV ANVRYSDFFD  360
PFDDGMDMAN TLNANANQSA SLHVTEDKSG HSLIPNPKSG PHM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146151TRKRRS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00382DAPTransfer from AT3G26790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5211820.0EF521182.1 Orayza sativa japonica LFL1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635173.10.0PREDICTED: B3 domain-containing protein LFL1 isoform X2
SwissprotA4LBC00.0LFL1_ORYSJ; B3 domain-containing protein LFL1
TrEMBLA0A0E0FS590.0A0A0E0FS59_ORYNI; Uncharacterized protein
STRINGLOC_Os01g51610.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80912736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.12e-39B3 family protein